References

When using BrainSpace, please cite the following manuscript:

• Vos de Wael R, Benkarim O, Paquola C, Lariviere S, Royer J, Tavakol S, Xu T, Hong S, Langs G, Valk S, Misic B, Milham M, Margulies D, Smallwood J, Bernhardt B (2020). BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets. Commun Biol 3, 103.

The following references used methodology similar, or identical, to those described here:

Functional gradients of the adult connectome.

• Margulies D, Ghosh SS, Goulas A, Falkiewicz M, Huntenburg JM, Langs G, Bezgin G, Eickhoff S, Castellanos FX, Petrides M, Jefferies E, Smallwood J (2016) Situating the default-mode network along a principal gradient of macroscale cortical organization. PNAS

Functional gradients of the neonatal connectome.

• Larivière S, Vos de Wael R, Hong S, Lowe A, Tavakol S, Paquola C, Schrader DS, Bernhardt BC (2019) Multiscale structure-function gradients in the neonatal connectome. Cerebral Cortex. 2019 April 10. doi: 10.1093/cercor/bhz069

Functional gradients in autism.

• Hong S, Vos de Wael R, Bethlehem R, Lariviere S, Paquola C, DiMartino A, Milham M, Margulies D, Smallwood J, Bernhardt BC (2019) Atypical functional connectome hierarchy in autism. Nature Communications, in press

Functional gradients in aging.

• Lowe A, Paquola C, Vos de Wael R, Girn M, Caldairou B, Larivière S, Tavakol S, Royer J, Schrader DV, Bernasconi N, Bernasconi A, Spreng RN, Bernhardt BC (2019) Targeting age-related differences in brain and cognition with multimodal imaging and connectome topography profiling. Human Brain Mapping, in press.

Functional gradients of the nonhuman primate connectome.

• Manea, A. M. G., Zilverstand, A., Ugurbil, K., Heilbronner, S. R., & Zimmermann, J. (2021). Intrinsic timescales as an organizational principle of neural processing across the whole rhesus macaque brain. bioRxiv, 2021.2010.2005.463277. doi:10.1101/2021.10.05.463277

Meta-analytic co-activation and functional gradients in the hippocampus.

• Vos de Wael R, Larivière S, Caldairou B, Hong S, Jefferies E, Margulies DS, Smallwood J, Bernasconi N, Bernhardt BC (2018) Anatomical and microstructural determinants of hippocampal subfield functional connectome embedding. PNAS 115(40):10154-10159.

Gradients of microstructural markers.

• Paquola C, Vos de Wael R, Wagstyl K, Bethlehem R, Seidlitz J, Hong S, Bullmore ET, Evans AC, Misic B, Margulies DS, Smallwood J, Bernhardt BC (2019) Dissociations between microstructural and functional hierarchies within regions of transmodal cortex. PLoS Biology, in press.
• Paquola C, Bethlehem RAI, Seidlitz J, Wagstyl K, Romero-Garcia, Whitaker KJ, Vos de Wael R, Williams GB, NSPN Consortium, Vertes PE, Bernhardt BC, Bullmore ET (2019). A moment of change: shifts in myeloarchitecture profiles characterize adolescent development of cortical gradients. Preprint: https://www.biorxiv.org/content/10.1101/706341v1

Please send us your gradient papers, so that we can list them here as well!